File List

Here is a list of all files with brief descriptions:

[detail level 123]

controller
.ycm_extra_conf.py
controller.cpp
controller.h
toroidal.cpp
toroidal.h
docs
compiling.cpp
input.cpp
nersc.cpp
running.cpp
todo.cpp
engine
.ycm_extra_conf.py
async_write.cpp
engine.cpp
engine.h
engine_run.cpp
engine_write.cpp
engineimp.h
graph.cpp
graph.h
input.cpp
input.h
item.cpp
item.h
item_dim.cpp
item_dim.h
item_wrapper.cpp
item_wrapper.h
list.cpp
list.h
native_item.hpp
variable.cpp
variable.h
integrator
.ycm_extra_conf.py
euler_sde.cpp
euler_sde.h
euler_sde_tmpl.hpp
example_integrator.cpp
example_integrator.h
example_integrator_tmpl.hpp
integrator.cpp
integrator.h
lsoda.cpp
rk4.cpp
rk4.h
rk45.cpp
rk45.h
rk45_tmpl.hpp
rk4_tmpl.hpp
lisp
.ycm_extra_conf.py
engine_read.cpp
eval_lisp.cpp
eval_lisp.h
graph.cpp
graph.h
lisp.cpp
lisp.h
objective
.ycm_extra_conf.py
n_pulse_score.cpp
n_pulse_score.h
objective.cpp
objective.h
rhs
.ycm_extra_conf.py
c_elegans.cpp
c_elegans.h
example_rhs.cpp
example_rhs.h
gaba_list.hpp
rhs.cpp
rhs.h
rhs_CNLS.cpp
rhs_CNLS.h
rhs_sde.cpp
rhs_sde.h
rhs_SQGLE.cpp
rhs_SQGLE.h
rhs_type.hpp
scripts
optimal-frequencies
hasher.cpp
hasher.h
python
learn-grad.py
process_data.py
simulation
.ycm_extra_conf.py
jones_optical.cpp
jones_optical.h
ode.cpp
ode.h
ode_tmpl.hpp
simulation.cpp
simulation.h
stable.cpp
stable.h
stable_ode.cpp
stable_ode_tmpl.hpp
stable_spectral_pde_1d_tmpl.hpp
types
example_type.hpp
fast_complex.hpp
float_traits.hpp
item_factory.cpp
item_factory.h
type_constructor.hpp
type_operators.hpp
type_register.hpp
utils
.ycm_extra_conf.py
comp_funcs.hpp
defs.hpp
inline_trig.h
item_heads.hpp
main.cpp
mempool.cpp
mempool.hpp
noise.hpp
ptr_passer.hpp
retrieve_checker.hpp
utils.cpp
vartype.hpp
writer
.ycm_extra_conf.py
data.hpp
writer.cpp
writer.h
make.inc