  __HIDER__::__retrieve_helper< T, bool > | |
| __HIDER__::__retrieve_helper< T, true > | |
| _fatal | |
 type_constructor< Tin >::_ttype< Tout > | This is an internal polymorphic base class. It returns a pointer of type tout |
  type_constructor< Tin >::ttype< Tval, Tout > | This is the actual creator class. It creates a pointer of Tin with the template parameter Tval |
| __HIDER__::_unique_name | Create a unique name that cannot already exist in the engine, should never reference directly |
| _warning | |
| __HIDER__::acml_rng | Rng generator struct; |
| apply< T, dim > | Class containing functions for mapping over generic objects |
| apply< T, 1 > | |
| blacklist_checker | Class to designate a blacklist |
| blacklist< P > | This class provides a type blacklist that can be passed to the function |
| comp_get_helper< T, dim, is_first > | Helper class for complex number getter |
| comp_get_helper< T, dim, false > | Helper class for complex number getter |
| data | Class to hold a piece of constant data, enforces constant correctness |
| data_io_info | Structure holding parameters for data io |
| jones_optical::data_store | |
| dim_check< bound, dim > | Value is true if dim>0 and dim <= bound. static_asserts on value as well |
| engine | |
| engineimp | |
| example_type | |
| fast_comp< T > | |
| fft_plan_holder | |
| float_traits< T > | This class defines the basic floating_point type and dimension for a class |
| float_traits< double > | |
| float_traits< example_type > | |
| float_traits< std::complex< T > > | Specialization of float_traits for std::complex |
| get< T, dim > | Generic get function. Fails to compile for non floating_point values and returns the reference for a floating point value |
| get< example_type, 1 > | Get function for first dimension |
| get< example_type, 2 > | Get function for second dimension |
| get< example_type, dim > | Unspecialized get function that will fail static_assert |
| get< std::complex< T >, dim > | Getter for complex numbers |
| get< T *, dim > | Getter specialization for pointers, has no bounds checking except for <= 0 |
| get< T[], dim > | Getter specialization for compile-time sized arrays, does bounds checking |
| get_cref< T, dim > | Returns a constant reference to the value |
| get_val< T, dim > | Returns a copy of the value |
| graph | This class puts data into a graph based upon dependencies and performs a topological sort |
| graph::graphnode | |
| hasher | |
| imag_unit< T > | |
| imag_val< T > | |
| __HIDER__::Impl< Th, Tl...> | |
| __HIDER__::Impl<> | |
| input | This class wraps the raw input for retrieval purposes |
| item | |
| ftest1 | |
| ftest2 | |
| ftest3 | |
| item_dim | |
| controller | This is the base class for the control type classes |
| toroidal | This class defines the toroidal search controller |
| integrator | This class defines the integration base class |
 euler_sde | Dormand-Prince integrator |
| euler_sde_tmpl< T > | Template implementation of the stochastic euler integrator |
| example_integrator | |
| example_integrator_tmpl< T > | |
| rk4 | Dormand-Prince integrator |
| rk4_tmpl< T > | |
 rk45 | Dormand-Prince integrator |
 rk45_tmpl< T > | Dormand-Prince integrator |
| objective | THis class represents the objective function class that calculates the score of a solution |
| n_pulse_score | This class calculates the score of a solution with n pulses, tailored towards the quality of a laser pulse |
| rhs | The rhs base class |
| rhs_sde | |
| rhs_type< double, rhs_sde > | |
| c_elegans | This class represents the c_elegans system |
| rhs_type< comp > | |
| example_rhs | This class is a basic example of how to write an rhs class |
| rhs_CNLS | The class defining the CNLS equations |
| rhs_SQGLE | |
 simulation | |
| ode | Integrates an ODE forwards in time |
| ode_tmpl< T > | |
| stable | A system that attempts to reach an equilibrium |
| stable_ode | A class representing an ODE system that is integrated towards stability |
| stable_ode_tmpl< T > | |
| stable_spectral_pde_1d_tmpl< T > | This class represents the spectral integration of a PDE |
| stable_ode_tmpl< comp > | |
| stable_spectral_pde_1d_tmpl< comp > | |
| jones_optical | This class defines a jones matrix optical system |
| native_item | |
| list | |
| native_tmpl< T, act_name > | This class provides a generic interface for making native types |
| jones_matrix | |
| variable | Stores a real number that is varied during the simulation |
| item_factory | |
| item_wrapper | This class wraps the actual item that has been input |
| __HIDER__::lmake< Th, Tl...> | |
| __HIDER__::lmake<> | |
| mempool | This provides a class to assisst with memory management |
| __HIDER__::native_names | |
| param_val | |
| __HIDER__::ptr_make | |
| ptr_passer | |
| retrieve_wrapper | Pointer wrapper to ensure type-safety in the retrieve function, while removing the need for a template in the rest of the code |
| __retrieve_checker< T > | |
| rhs_type< T, _rhs_type > | Type interface for the rhs class |
| sub_type< T, val > | Helper class for float_traits |
| sub_type< T, true > | Helper specialization for float_traits |
| data::this_is_private | |
| type_constructor< Tin > | Class for constructing statically-typed classes when type is determined at runtime |
| type_register< T > | Registers a string to a type creation function |
| typelist_checker | Class to designate a whitelist creator |
| typelist< P > | Class for iterating over a list of types and creating the corresponding template class |
| vartype | Interface class to signal that an object deals with typed variables |
| integrator | This class defines the integration base class |
| ode | Integrates an ODE forwards in time |
| rhs | The rhs base class |
| stable | A system that attempts to reach an equilibrium |
| writer | This class defines the interface for sending data to the engine for writing |
1.8.1.2
